Keyword Analysis & Research: bftools

openmicroscopy.org

https://docs.openmicroscopy.org/bio-formats/5.8.2/users/imagej/installing.html

WebBio-Formats is a tool for reading and writing images in various formats. Download the command line tools bundle bftools.zip to use Bio-Formats on the command line with bioformats_package.jar.

DA: 70 PA: 36 MOZ Rank: 16

openmicroscopy.org

https://docs.openmicroscopy.org/bio-formats/5.7.1/users/comlinetools/conversion.html

DA: 54 PA: 20 MOZ Rank: 97

github.com

https://github.com/VolkerH/Tutorial-on-bftools-and-bfconvert

Aim / AudienceA quick example:Download and installationCommand line basicsbfconvert common use case.Format stringzero-padding of numbersDo I use % or %% ?Whitespace in file and folder namesFormat conversion, splitting and renaming AlternativesUsing a database such as Omero is an alternative (and arguably "better") approach to standardizing input files from heterogenous microscopes. However, in particular for smaller labs/facilities, introducing a database systems also comes with challenges (administration, user …

AlternativesUsing a database such as Omero is an alternative (and arguably "better") approach to standardizing input files from heterogenous microscopes. However, in particular for smaller labs/facilities, introducing a database systems also comes with challenges (administration, user …

DA: 94 PA: 42 MOZ Rank: 81