Keyword Analysis & Research: de novo rna seq analysis on galaxy

Keyword Analysis


Keyword CPC PCC Volume Score Length of keyword
de novo rna seq analysis on galaxy1.320.358441134
de1.940.82972322
novo0.9813794144
rna1.760.4724723
seq0.580.99479733
analysis1.430.32668138
on1.970.68640332
galaxy1.240.16196566

Keyword Research: People who searched de novo rna seq analysis on galaxy also searched

Keyword CPC PCC Volume Score
de novo rna seq analysis on galaxy1.690.1982275

Search Results related to de novo rna seq analysis on galaxy on Search Engine

  • De novo transcriptome reconstruction with RNA-Seq - Galaxy …

    galaxyproject.org

    https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/de-novo/tutorial.html

    WEBFeb 19, 2017 · How can we generate a transcriptome de novo from RNA sequencing data? Objectives: Analysis of RNA sequencing data using a reference genome. Reconstruction of transcripts without reference transcriptome (de novo) Analysis of differentially expressed genes. Requirements: Introduction to …

    DA: 46 PA: 90 MOZ Rank: 83

  • De novo transcriptome assembly, annotation, and differential …

    galaxyproject.org

    https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/full-de-novo/tutorial.html

    WEBFeb 13, 2020 · Introduction to Galaxy Analyses. Sequence analysis. Hands-on: Hands-on: Quality Control: slides - hands-on. Hands-on: Hands-on: Mapping: slides - hands-on. Time estimation: 3 hours. Supporting Materials: Datasets. Workflows. FAQs. Available on these Galaxies. Published: Feb 13, 2020. Last modification: Nov 3, 2023.

    DA: 14 PA: 31 MOZ Rank: 45

  • Finding and quantifying new transcripts - Galaxy Community Hub

    galaxyproject.org

    https://galaxyproject.org/tutorials/nt-rnaseq/

    WEBWe will use a de novo transcript reconstruction strategy (not to be confused with the de novo RNAseq when reference genome is not known) to infer transcript structures from the mapped reads in the absence of the actual annotated transcript structures. This will allow us to identify novel transcripts and novel isoforms of known transcripts, as ...

    DA: 23 PA: 22 MOZ Rank: 31

  • A simple guide to de novo transcriptome assembly and annotation

    nih.gov

    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8921630/

    WEBJan 24, 2022 · A core element in the downstream analysis for RNA-seq data involves the translation of assembled sequences into their corresponding amino acid sequences, and on the nucleotide level into the protein coding sequences (CDS) not containing any untranslated regions (UTRs).

    DA: 95 PA: 9 MOZ Rank: 99

  • Genome-wide alternative splicing analysis - Galaxy Training …

    galaxyproject.org

    https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/differential-isoform-expression/tutorial.html

    WEBMay 17, 2023 · Sequence analysis. Hands-on: Hands-on: Quality Control: slides - hands-on. Hands-on: Hands-on: Mapping: slides - hands-on. Time estimation: 3 hours. Level: Advanced. Supporting Materials: Slides. Datasets. Workflows. FAQs. Available on these Galaxies. Published: May 17, 2023. Last modification: Mar 7, 2024.

    DA: 5 PA: 51 MOZ Rank: 33

  • de novo assembly of Illumina reads using Velvet (Galaxy

    github.io

    https://melbournebioinformatics.github.io/MelBioInf_docs/tutorials/assembly/assembly/

    WEBThe protocol in a nutshell: Input: Raw reads from sequencer run on microbial DNA sample. Output: File of assembled scaffolds/contigs and associated information. Preparation. Login to Galaxy. Open a browser and go to a Galaxy server. (what is Galaxy ?) You can use a galaxy server of your own or. Galaxy Tute at genome.edu.au.

    DA: 86 PA: 81 MOZ Rank: 21

  • RNA-Seq Data Analysis in Galaxy - PubMed

    nih.gov

    https://pubmed.ncbi.nlm.nih.gov/33835453/

    WEBA complete RNA-Seq analysis involves the use of several different tools, with substantial software and computational requirements. The Galaxy platform simplifies the execution of such bioinformatics analyses by embedding the needed tools in its web interface, while also providing reproducibility.

    DA: 93 PA: 74 MOZ Rank: 13

  • A Bayesian approach for accurate de novo transcriptome assembly …

    nature.com

    https://www.nature.com/articles/s41598-021-97015-x

    WEBSep 3, 2021 · De novo transcriptome assembly from billions of RNA-seq reads is very challenging due to alternative splicing and various levels of expression, which often leads to incorrect, mis-assembled... galaxy

    galaxy

    DA: 8 PA: 13 MOZ Rank: 12

  • De novo transcript sequence reconstruction from RNA-seq using …

    nature.com

    https://www.nature.com/articles/nprot.2013.084

    WEBMay 15, 2011 · De novo assembly of RNA-seq data enables researchers to study transcriptomes without the need for a genome sequence; this approach can be usefully applied, for instance, in research on... galaxy

    galaxy

    DA: 45 PA: 69 MOZ Rank: 85

  • STAble: a novel approach to de novo assembly of RNA-seq data …

    biomedcentral.com

    https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2174-6

    WEBJul 9, 2018 · De novo assembly of RNA-seq data allows the study of transcriptome in absence of a reference genome either if data is obtained from a single organism or from a mixed sample as in metatranscriptomics studies. galaxy

    galaxy

    DA: 49 PA: 60 MOZ Rank: 51