WebChallenges, critical parameters, and possible downstream functional analysis pipelines associated with each step are highlighted and discussed. This provides a comprehensive understanding of state-of-the-art RNA-seq analysis pipeline and a greater …
DA:53PA:66MOZ Rank:15
Tutorial: guidelines for the computational analysis of single-cell …
WebPublished: 07 December 2020. Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data. Tallulah S. Andrews, Vladimir Yu Kiselev, Davis McCarthy & …
DA:73PA:69MOZ Rank:61
ARPIR: automatic RNA-Seq pipelines with interactive report
WebAutomatic RNA-Seq Pipelines with Interactive Report (ARPIR) carry out the entire RNA-Seq analysis and can be used by command line, but a graphical interface is also available …
DA:94PA:56MOZ Rank:60
A survey of best practices for RNA-seq data analysis
WebAbstract. RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq …
DA:7PA:32MOZ Rank:85
pyrpipe: a Python package for RNA-Seq workflows - PMC
Webpyrpipe provides high-level APIs, to access full functionality of 11 popular RNA-Seq analysis tools that expedite and enhance implementation of RNA-Seq pipelines that can be …
DA:66PA:60MOZ Rank:55
Systematic comparison and assessment of RNA-seq procedures …
WebRNA-seq is currently considered the most powerful, robust and adaptable technique for measuring gene expression and transcription activation at genome-wide level. As the …
DA:24PA:55MOZ Rank:95
An open RNA-Seq data analysis pipeline tutorial with an example …
WebThe pipeline enables the extraction of knowledge from typical RNA-seq studies by generating interactive principal component analysis (PCA) and hierarchical clustering …
DA:35PA:31MOZ Rank:29
SPEAQeasy: a scalable pipeline for expression analysis and
WebPublished: 01 May 2021. SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses. Nicholas J. Eagles, Emily …
DA:78PA:7MOZ Rank:75
A flexible cross-platform single-cell data processing pipeline
WebSingle-cell RNA-sequencing analysis to quantify the RNA molecules in individual cells has become popular, as it can obtain a large amount of information from each experiment.
DA:86PA:11MOZ Rank:90
VIPER: Visualization Pipeline for RNA-seq, a Snakemake …
WebVIPER (Visualization Pipeline for RNA-seq analysis) is an analysis workflow that combines some of the most popular tools to take RNA-seq analysis from raw sequencing data, …
