snakemake | Snakemake | Snakemake 8.10.6 documentation

Keyword	CPC	PCC	Volume	Score	Length of keyword
snakemake	1.07	0.9	2715	82	9

Keyword	CPC	PCC	Volume	Score
snakemake	0.05	0.5	7594	98
snakemake tutorial	1.49	0.7	1584	92
snakemake conda	1.44	0.7	4951	39
snakemake github	0.23	0.2	7064	50
snakemake install	1.11	0.7	5603	19
snakemake wildcards	0.36	0.5	9031	27
snakemake slurm	0.45	0.7	7418	23
snakemake dag	1.91	0.2	694	34
snakemake workflow	0.81	1	8968	55
snakemake wrapper	1.84	0.6	9832	41
snakemake expand	1.7	0.7	9972	26
snakemake docker	0.53	1	195	21
snakemake checkpoint	0.13	1	8134	67
snakemake params	1.68	0.9	8293	28
snakemake run	0.31	0.9	8527	94
snakemake temp	1.54	0.8	3666	71
snakemake rule all	1.43	0.1	5634	59
snakemake python	1.37	0.1	3132	93
snakemake rnaseq	1.59	0.3	4470	47
snakemake fastqc	0.64	0.4	4934	1
snakemake vs nextflow	1.78	0.6	8831	44
snakemake report	0.82	0.2	3826	30
snakemake glob_wildcards	0.74	0.6	9725	28
snakemake documentation	1.31	0.5	7776	18

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Snakemake | Snakemake 8.10.6 documentation - Read the Docs
readthedocs.io

https://snakemake.readthedocs.io/en/stable/

WEBSnakemake. The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments, without the need to modify the workflow definition.

DA: 58 PA: 66 MOZ Rank: 89

GitHub - snakemake/snakemake: This is the development home …
github.com

https://github.com/snakemake/snakemake

WEBThe Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Snakemake is highly popular, with on average more than 7 new citations per week in 2021, and almost 400k downloads. Workflows are described via a human readable, Python based language.

DA: 100 PA: 88 MOZ Rank: 68

Snakemake
github.io

https://snakemake.github.io/

WEBSnakemake. A framework for reproducible data analysis. >11 new citations per week ( old + new paper) >1,000,000 downloads. Open source, MIT licensed. Read the paper Read the docs Tutorial Workflow catalog. Readability and automation.

DA: 59 PA: 76 MOZ Rank: 84

Basics: An example workflow | Snakemake 8.10.7 documentation
readthedocs.io

https://snakemake.readthedocs.io/en/stable/tutorial/basics.html

WEBIn the following, we will introduce the Snakemake syntax by creating an example workflow. The workflow comes from the domain of genome analysis. It maps sequencing reads to a reference genome and calls variants on the mapped reads. The tutorial does not require you to know what this is about.

DA: 48 PA: 29 MOZ Rank: 42

Snakemake Tutorial | Snakemake 8.10.6 documentation - Read …
readthedocs.io

https://snakemake.readthedocs.io/en/stable/tutorial/tutorial.html

WEBStep 1: Mapping reads. Step 2: Generalizing the read mapping rule. Step 3: Sorting read alignments. Step 4: Indexing read alignments and visualizing the DAG of jobs. Step 5: Calling genomic variants. Step 6: Using custom scripts. Step 7: Adding a target rule. Summary. Advanced: Decorating the example workflow.

DA: 96 PA: 30 MOZ Rank: 78

Snakemake—a scalable bioinformatics workflow engine
oup.com

https://academic.oup.com/bioinformatics/article/28/19/2520/290322

WEBAug 20, 2012 · Summary: Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow.

DA: 46 PA: 26 MOZ Rank: 92

snakemake · PyPI
pypi.org

https://pypi.org/project/snakemake/

WEBReleased: Apr 4, 2024. Project description. Snakemake is a workflow management system that aims to reduce the complexity of creating workflows by providing a fast and comfortable execution environment, together with a clean and modern specification language in …

DA: 82 PA: 55 MOZ Rank: 73

Hands-on: Make & Snakemake / Foundations of Data Science
galaxyproject.org

https://training.galaxyproject.org/training-material/topics/data-science/tutorials/snakemake/tutorial.html

WEBNov 18, 2021 · What is Make & Snakemake. What is a Makefile/Snakefile. How do these improve pipelines over simple scripts? Why is Snakemake better for scientific research and how can I use it. How do I use conda envs with Snakemake? Objectives: Write a snakefile that does a simple QC and Mapping workflow. Requirements: Foundations of Data Science. CLI …

DA: 100 PA: 10 MOZ Rank: 46

An introduction to Snakemake tutorial for beginners (CC248)
youtube.com

https://www.youtube.com/watch?v=r9PWnEmz_tc

WEBSep 15, 2022 · Snakemake is a powerful tool for keeping track of data dependencies and to automate data analysis pipelines. In this episode of Code Club, Pat Shares how to install snakemake, convert a driver...

DA: 11 PA: 26 MOZ Rank: 49

Snakemake Tutorial
bitbucket.io

https://snakemake.bitbucket.io/snakemake-tutorial.html

WEBA Snakemake workflow is defined by specifying rules in a Snakefile. Rules decompose the workflow into small steps (e.g., the application of a single tool) by specifying how to create sets of output files from sets of input files. Snakemake automatically determines the dependencies between the rules by matching file names.

DA: 87 PA: 22 MOZ Rank: 6